Lesson 3: Microbiology, Immunology and Public Health Tests

Cultures, serology, infectious screening and autoimmune markers.

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Complete learning materials

Review each topic, apply the clinical case, then complete the linked ten-question assessment.

Selecting infectious tests

  • Use exposure history, syndrome, symptom duration, vaccination and local prevalence to choose appropriate tests.
  • Obtain cultures before antimicrobial therapy when feasible for severe infection, but never delay life-saving management.
  • Distinguish infection from colonization: a positive test may not imply the organism causes symptoms.

Test characteristics and timing

  • NAAT/PCR detects organism nucleic acid, which may persist after infectivity resolves; timing and specimen quality matter.
  • Antibody tests can be negative early in infection and sometimes remain positive after prior infection or vaccination.
  • A negative test does not reliably exclude disease when pretest probability is high and sensitivity depends on illness stage.

Autoimmune and inflammation tests

  • ESR and CRP are nonspecific; interpret with symptoms and history instead of using them as stand-alone diagnoses.
  • ANA has a substantial false-positive burden in low-risk populations; order with a compatible clinical syndrome.
  • Use reflex or specific antibodies judiciously and understand that a positive screen alone is not a diagnosis.

Public health and consent

  • Follow applicable local public-health reporting obligations and laboratory collection instructions; explain confidentiality limits.
  • Use informed consent and pre/post-test counselling for sensitive testing as required by local policy.
  • Use evidence-based screening recommendations; avoid ordering repeated serology without a meaningful clinical question.

Applied clinical case

Case: A patient with dysuria but no systemic illness needs symptom-directed urine testing; a positive urine culture without symptoms generally should not trigger antibiotics except in specific guideline-defined circumstances such as pregnancy.

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